SPOKE: Scalable, Precision medicine, Open Knowledge Engine
Developers Home Page
References
Group meeting (July 2, 2018) slides
Precision Medicine at UCSF, Knowledge Network
Project Rephetio Browser: Drug repurposing predictions
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Preliminary documentation of SPOKE data sources
Elaine's SPOKE links
Web Interfaces
Neighborhood Explorer
with some
sample queries
Query SEA using SMILES
First UI prototype
Number of nodes and edges
Node statistics (fraction of singletons, degrees)
Meta-graph
Daily updates:
Status
Log details
Run times
Weekly snapshot (neo4j dump format)
[password required]
SPOKE database instances (UCSF only)
Developer instance
Build instance
Production instance
Google Biomedical Data Commons
Data files (temporary location)
MCF Validation
Analysis intermediate results (preview site only)
Disease-presents-Symptom data
Using production SPOKE data
Using proposed data
Disease-localizes-Anatomy data