SPOKE: Scalable, Precision medicine, Open Knowledge Engine

Developers Home Page

• References
  • Group meeting (July 2, 2018) slides
  • Precision Medicine at UCSF, Knowledge Network
  • Project Rephetio Browser: Drug repurposing predictions [ ref]
  • Preliminary documentation of SPOKE data sources
  • Elaine's SPOKE links
• Web Interfaces
  • Neighborhood Explorer with some sample queries
  • Query SEA using SMILES
  • First UI prototype
  • Number of nodes and edges
  • Node statistics (fraction of singletons, degrees)
  • Meta-graph
  • Daily updates: Status Log details Run times
  • Weekly snapshot (neo4j dump format) [password required]
• SPOKE database instances (UCSF only)
  • Developer instance
  • Build instance
  • Production instance
• Google Biomedical Data Commons
  • Data files (temporary location)
  • MCF Validation
• Analysis intermediate results (preview site only)
  • Disease-presents-Symptom data
    • Using production SPOKE data
    • Using proposed data
  • Disease-localizes-Anatomy data